Brain Explorer

Brain Explorer is a desktop software application for viewing Allen Brain Atlas (ABA) gene expression data in the framework of the Allen Reference Atlas (ARA) in 3D. Using Brain Explorer, you can:

View a fully interactive version of the ARA in 3D
View gene expression data in 3D at 100 μm³ resolution
View expression data from multiple genes superimposed on each other in 3D
Navigate the high-resolution 2D ISH images from the ABA using the 3D model
Link to associated gene metadata on the ABA website

The 3D data shown in Brain Explorer is generated from the same process employed in the search algorithms on the ABA web site; see the Informatics white paper for more information. Download a sample data set, or use one of the following options to download gene expression data directly from the ABA site

Application Details:

Developer:	Allen Institute for Brain Science
URL:	http://www.brain-map.org

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For more details and user comments, view the versions of this application

Version	Description	Latest Rating	Latest Wine version tested	Test results	Comments
1.2	No version information is available	Bronze	0.9.29.	1	0
1.3	Full details available here - http://www.brain-map.org/whatsNew.do	Bronze	0.9.34.	1	0
1.4	Changes for 1.4	Platinum	0.9.47.	1	0
2.3.5 build 2393	Allen Brain Atlas	Platinum	7.19	1	0

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