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CytoMAP

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Most recent version as at 2021-Jul-26.

Commits since previous version:

  • added option to change overlap threshold in interaction plots
  • cleaned up interface themes backend
  • fixed button name
  • tweaked backend code on neighborhood interaction plots
  • tweaked extensions
  • made the fit plots in density model smoother and added overlay of fit functions
  • updated nearest neighbor extension
  • added a try statement to load .wsp to deal with new ways FlowJo saves derived parameter names

Application Details:

Version: 1.4.21
License: Free to use
URL: https://gitlab.com/gernerlab/c...
Votes: 0
Latest Rating: Garbage
Latest Wine Version Tested: 6.13

Maintainers: About Maintainership

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Free Download Standalone installer for V1.4.21

Test Results

Old test results
The test results you have selected are very old and may not represent the current state of Wine.
Selected Test Results

What works

  • Installer splash screen
  • Unpacks installer files into installer directory

Unzipping the 'bundle.zip' file and running "CytoMAP.exe" from within the "application" directory produces a CytoMAP splash screen (but then fails).


What does not

Segmentation fault on install:

$ wine CytoMAP_Installer_WindowsV1.4.21.exe
00f8:fixme:shell:PathMakeUniqueNameW 0x11f660 260 (null) L"tmp_install_dir" L"C:\\users\\gringer\\Temp\\" stub
00f8:fixme:wininet:InternetSetOptionW INTERNET_OPTION_SEND/RECEIVE_TIMEOUT/DATA_SEND_TIMEOUT 300000
wine: Unhandled page fault on write access to 0000000000000000 at address 0000000061752A59 (thread 00f8), starting debugger...
Unhandled exception: page fault on write access to 0x00000000 in 64-bit code (0x0000000061752a59).
Register dump:
 rip:0000000061752a59 rsp:000000000011dec0 rbp:000000000011f850 eflags:00010246 (  R- --  I  Z- -P- )
 rax:0000000000000000 rbx:0000000000000000 rcx:0000000000000000 rdx:00000000400181f8
 rsi:0000000000000000 rdi:000000000011f7e8  r8:000000000011f7e8  r9:0000000000000001 r10:0000000000000008
 r11:0000000000000246 r12:0000000000217c20 r13:000000000000002b r14:0000000000000000 r15:0000000000201ea0
Stack dump:
0x000000000011dec0:  000000000011f850 0000000000010052
0x000000000011ded0:  0000000000000003 000000006176b98d
0x000000000011dee0:  0000000000201ea0 000000000011f7e8
0x000000000011def0:  00000000002152b0 0000000000000000
0x000000000011df00:  000000000011f7e8 00000000002152b0
0x000000000011df10:  0000000000000000 000000000011f850
0x000000000011df20:  0000000000217c20 0000000061771a74
0x000000000011df30:  000000000011f850 00000000002152d4
0x000000000011df40:  0000000000000000 0000000000000012
0x000000000011df50:  0000000000000001 0000000067fd0000
0x000000000011df60:  0000000000000202 000000007b04f835
0x000000000011df70:  0000000000000fff 0000000000000000
Backtrace:
=>0 0x0000000061752a59 EntryPoint+0xffffffffffffffff() in wininet (0x000000000011f850)
  1 0x0000000061771a74 EntryPoint+0xffffffffffffffff() in wininet (0x000000000011f850)
  2 0x000000014001b206 in cytomap_installer_windowsv1.4.2 (+0x1b205) (0x000000000011f850)
  3 0x000000014001aca8 in cytomap_installer_windowsv1.4.2 (+0x1aca7) (0x000000000011f850)
  4 0x0000000140014406 in cytomap_installer_windowsv1.4.2 (+0x14405) (0x000000000011f980)
  5 0x000000014000bd1c in cytomap_installer_windowsv1.4.2 (+0xbd1b) (0x000000000011fb90)
  6 0x0000000140015eed in cytomap_installer_windowsv1.4.2 (+0x15eec) (0x0000000000000000)
  7 0x000000014004ae3a in cytomap_installer_windowsv1.4.2 (+0x4ae39) (0x0000000000000000)
  8 0x000000007b62c909 EntryPoint+0xffffffffffffffff() in kernel32 (0x0000000000000000)
  9 0x000000007bc56d03 EntryPoint+0xffffffffffffffff() in ntdll (0x0000000000000000)
0x0000000061752a59 EntryPoint+0xffffffffffffffff in wininet: movw       %cx,(%rsi)
Modules:
Module  Address                                 Debug info      Name (45 modules)
PE                250000-          798000       Deferred        comctl32
PE                7a0000-          a8d000       Deferred        gdiplus
PE                fa0000-         13c7000       Deferred        windowscodecs
PE               13d0000-         13ef000       Deferred        nsi
PE               16d0000-         1775000       Deferred        secur32
PE              61540000-        61669000       Deferred        advapi32
PE              61740000-        6199a000       Dwarf           wininet
PE              62980000-        6298f000       Deferred        api-ms-win-core-localization-l1-2-1
PE              62dc0000-        6303b000       Deferred        rpcrt4
PE              63280000-        6329e000       Deferred        version
PE              639c0000-        63a13000       Deferred        shcore
PE              64840000-        6494d000       Deferred        shlwapi
PE              64cc0000-        651b5000       Deferred        oleaut32
PE              65d40000-        65d6a000       Deferred        kerberos
PE              66040000-        66094000       Deferred        bcrypt
PE              67600000-        6760e000       Deferred        api-ms-win-core-string-l1-1-0
PE              68300000-        68483000       Deferred        combase
PE              68500000-        685aa000       Deferred        uxtheme
PE              686c0000-        68769000       Deferred        netapi32
PE              69740000-        697b5000       Deferred        propsys
PE              6a200000-        6a766000       Deferred        ole32
PE              6aa80000-        6aa8e000       Deferred        api-ms-win-core-fibers-l1-1-1
PE              6b300000-        6b30e000       Deferred        api-ms-win-core-localization-obsolete-l1-2-0
PE              6ba00000-        6bab8000       Deferred        sechost
PE              6bac0000-        6bca5000       Deferred        setupapi
PE              6c7c0000-        6cfdf000       Deferred        gdi32
PE              6d680000-        6d6bf000       Deferred        msv1_0
PE              6db00000-        6db20000       Deferred        schannel
PE              6dc80000-        6dc8f000       Deferred        api-ms-win-core-synch-l1-2-0
PE              6e2c0000-        6e304000       Deferred        dnsapi
PE              6e6c0000-        6ea1e000       Deferred        crypt32
PE              6eb00000-        6f2b4000       Deferred        user32
PE              6fc40000-        6fcfa000       Deferred        rsaenh
PE              6fd80000-        6fd8e000       Deferred        api-ms-win-core-datetime-l1-1-1
PE              70740000-        707a3000       Deferred        mpr
PE              70940000-        70cea000       Deferred        ucrtbase
PE              71000000-        71061000       Deferred        imm32
PE              7b000000-        7b3e4000       Deferred        kernelbase
PE              7b600000-        7b95f000       Dwarf           kernel32
PE              7bc00000-        7bf00000       Dwarf           ntdll
PE             140000000-       140a80000       Export          cytomap_installer_windowsv1.4.21
PE          7f8ff56c0000-    7f8ff56c4000       Deferred        iphlpapi
PE          7f8ff6a80000-    7f8ff6a84000       Deferred        winex11
PE          7f8ff6f70000-    7f8ff6f76000       Deferred        ws2_32
PE          7f8ff70c0000-    7f8ff7997000       Deferred        shell32
Threads:
process  tid      prio (all id:s are in hex)
00000020 start.exe
        00000024    0
00000038 services.exe
        0000003c    0
        00000040    0
        0000004c    0
        00000068    0
        000000a0    0
        000000bc    0
        000000d0    0
00000044 winedevice.exe
        00000048    0
        00000054    0
        00000058    0
        0000005c    0
00000060 winedevice.exe
        00000064    0
        0000006c    0
        00000070    0
        0000007c    0
        00000080    0
        00000084    0
00000074 explorer.exe
        00000078    0
        00000094    0
        00000098    0
0000008c plugplay.exe
        00000090    0
        000000a8    0
        000000ac    0
        000000b0    0
000000b4 svchost.exe
        000000b8    0
        000000c0    0
        000000c4    0
000000c8 rpcss.exe
        000000cc    0
        000000d4    0
        000000d8    0
        000000dc    0
        000000e0    0
        000000e4    0
000000ec conhost.exe
        000000f0    0
000000f4 (D) H:\gringer\install\CytoMAP\CytoMAP_Installer_WindowsV1.4.21.exe
        000000f8    0 <==
System information:
    Wine build: wine-6.13
    Platform: x86_64
    Version: Windows 10
    Host system: Linux
    Host version: 5.10.0-6-amd64

Workarounds

When running from within the installer-extracted archive, the following error appears:
"Could not find version 9.10 of the MATLAB Runtime. Attempting to load mclmCrrt9_10.dll. Please install the correct version of the MATLAB Runtime. Contact your vendor if you do not have an installer for the
MATLAB Runtime."

I attempted to install the MATLAB Runtime from
"https://ssd.mathworks.com/supportfiles/downloads/R2021a/Release/3/deployment_files/installer/complete/win64/MATLAB_Runtime_R2021a_Update_3_win64.zip'"
(3.6 GB download).

Running again after installing the runtime, I get no splash screen, and there is an error about MSVCP140.dll:

$ wine CytoMAP.exe
00fc:fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (000000000401CFF0 1 C) semi-stub
00fc:fixme:heap:RtlSetHeapInformation 00000000045E0000 0 000000000401DBC8 4 stub
wine: Call from 000000007BC2D548 to unimplemented function MSVCP140.dll.?get_new_handler@std@@YAP6AXXZXZ, aborting
0100:err:ntdll:RtlpWaitForCriticalSection
section 000000007BC61540 "dlls/ntdll/loader.c: loader_section" wait
timed out in thread 0100, blocked by 00fc, retrying (60 sec)
0100:err:ntdll:RtlpWaitForCriticalSection
section 000000007BC61540 "dlls/ntdll/loader.c: loader_section" wait
timed out in thread 0100, blocked by 00fc, retrying (60 sec)
[error repeats]

What was not tested

Using the application

Hardware tested

Graphics:

  • GPU: Nvidia
  • Driver: open source

Additional Comments

selected in Test Results table below
Operating systemTest dateWine versionInstalls?Runs?Used
Workaround?
RatingSubmitter
CurrentDebian GNU/Linux Testing "Bullseye"Jul 25 20216.13No Not installable YesGarbageDavid Eccles (gringer) 

Known Bugs

Bug # Description Status Resolution Other apps affected

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